BLASTN 2.2.24+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
           15,734,439 sequences; 40,323,510,998 total letters



Query=  blast
Length=33

RID: NYY2J6FH01N
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

emb|AL590682.9|  Human DNA sequence from clone RP11-435F13 on chr...  58.0    2e-006
ref|XM_002446969.1|  Sorghum bicolor hypothetical protein, mRNA       40.1    0.43  
gb|BT119244.1|  Picea glauca clone GQ04103_B18 mRNA sequence          36.2    6.7   
ref|XM_002629920.1|  Caenorhabditis briggsae Hypothetical protein...  36.2    6.7   
gb|AC204450.4|  Tupaia belangeri clone CH275-488P1, complete sequ...  36.2    6.7   
ref|XM_001012908.1|  Tetrahymena thermophila cyclic nucleotide-bi...  36.2    6.7   
emb|BX678775.3|  Mouse DNA sequence from clone RP24-82E8 on chrom...  36.2    6.7   


>emb|AL590682.9| Human DNA sequence from clone RP11-435F13 on chromosome 1 Contains 
a heterogeneous nuclear ribonucleoprotein A1 (HNRPA1) 
pseudogene, part of the RGS7 gene for regulator of G-protein 
signalling 7 and a ribosomal protein large P1 (RPLP1) pseudogene, 
complete sequence
Length=155156

 Score = 58.0 bits (29),  Expect = 2e-006
 Identities = 32/33 (96%), Gaps = 0/33 (0%)
 Strand=Plus/Minus

Query  1      GTGGAGAATTCTCTTCACTATCCGAGGATGTTG  33
              |||||||||||||||| ||||||||||||||||
Sbjct  25046  GTGGAGAATTCTCTTCGCTATCCGAGGATGTTG  25014


>ref|XM_002446969.1| Sorghum bicolor hypothetical protein, mRNA
Length=1266

 Score = 40.1 bits (20),  Expect = 0.43
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  3    GGAGAATTCTCTTCACTATC  22
            ||||||||||||||||||||
Sbjct  881  GGAGAATTCTCTTCACTATC  862


>gb|BT119244.1| Picea glauca clone GQ04103_B18 mRNA sequence
Length=1464

 Score = 36.2 bits (18),  Expect = 6.7
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  2     TGGAGAATTCTCTTCACT  19
             ||||||||||||||||||
Sbjct  1132  TGGAGAATTCTCTTCACT  1115


>ref|XM_002629920.1| Caenorhabditis briggsae Hypothetical protein CBG03693 (CBG03693) 
mRNA, complete cds
Length=2040

 Score = 36.2 bits (18),  Expect = 6.7
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  8     ATTCTCTTCACTATCCGA  25
             ||||||||||||||||||
Sbjct  1269  ATTCTCTTCACTATCCGA  1252


>gb|AC204450.4| Tupaia belangeri clone CH275-488P1, complete sequence
Length=141755

 Score = 36.2 bits (18),  Expect = 6.7
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  6      GAATTCTCTTCACTATCC  23
              ||||||||||||||||||
Sbjct  70019  GAATTCTCTTCACTATCC  70036


>ref|XM_001012908.1| Tetrahymena thermophila cyclic nucleotide-binding domain containing 
protein, mRNA
Length=2484

 Score = 36.2 bits (18),  Expect = 6.7
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  3     GGAGAATTCTCTTCACTA  20
             ||||||||||||||||||
Sbjct  2051  GGAGAATTCTCTTCACTA  2034


>emb|BX678775.3| Mouse DNA sequence from clone RP24-82E8 on chromosome 11, complete 
sequence
Length=65735

 Score = 36.2 bits (18),  Expect = 6.7
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  2     TGGAGAATTCTCTTCACT  19
             ||||||||||||||||||
Sbjct  7102  TGGAGAATTCTCTTCACT  7119



Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 

Effective search space used: 520114688834


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Mar 7, 2012 04:42 PM
  Number of letters in database: 40,323,510,998
  Number of sequences in database:  15,734,439



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2