BLASTN 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 15,734,439 sequences; 40,323,510,998 total letters Query= blast Length=33 RID: NYY2J6FH01N Score E Sequences producing significant alignments: (Bits) Value emb|AL590682.9| Human DNA sequence from clone RP11-435F13 on chr... 58.0 2e-006 ref|XM_002446969.1| Sorghum bicolor hypothetical protein, mRNA 40.1 0.43 gb|BT119244.1| Picea glauca clone GQ04103_B18 mRNA sequence 36.2 6.7 ref|XM_002629920.1| Caenorhabditis briggsae Hypothetical protein... 36.2 6.7 gb|AC204450.4| Tupaia belangeri clone CH275-488P1, complete sequ... 36.2 6.7 ref|XM_001012908.1| Tetrahymena thermophila cyclic nucleotide-bi... 36.2 6.7 emb|BX678775.3| Mouse DNA sequence from clone RP24-82E8 on chrom... 36.2 6.7 >emb|AL590682.9| Human DNA sequence from clone RP11-435F13 on chromosome 1 Contains a heterogeneous nuclear ribonucleoprotein A1 (HNRPA1) pseudogene, part of the RGS7 gene for regulator of G-protein signalling 7 and a ribosomal protein large P1 (RPLP1) pseudogene, complete sequence Length=155156 Score = 58.0 bits (29), Expect = 2e-006 Identities = 32/33 (96%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 1 GTGGAGAATTCTCTTCACTATCCGAGGATGTTG 33 |||||||||||||||| |||||||||||||||| Sbjct 25046 GTGGAGAATTCTCTTCGCTATCCGAGGATGTTG 25014 >ref|XM_002446969.1| Sorghum bicolor hypothetical protein, mRNA Length=1266 Score = 40.1 bits (20), Expect = 0.43 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 3 GGAGAATTCTCTTCACTATC 22 |||||||||||||||||||| Sbjct 881 GGAGAATTCTCTTCACTATC 862 >gb|BT119244.1| Picea glauca clone GQ04103_B18 mRNA sequence Length=1464 Score = 36.2 bits (18), Expect = 6.7 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 2 TGGAGAATTCTCTTCACT 19 |||||||||||||||||| Sbjct 1132 TGGAGAATTCTCTTCACT 1115 >ref|XM_002629920.1| Caenorhabditis briggsae Hypothetical protein CBG03693 (CBG03693) mRNA, complete cds Length=2040 Score = 36.2 bits (18), Expect = 6.7 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 8 ATTCTCTTCACTATCCGA 25 |||||||||||||||||| Sbjct 1269 ATTCTCTTCACTATCCGA 1252 >gb|AC204450.4| Tupaia belangeri clone CH275-488P1, complete sequence Length=141755 Score = 36.2 bits (18), Expect = 6.7 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Plus Query 6 GAATTCTCTTCACTATCC 23 |||||||||||||||||| Sbjct 70019 GAATTCTCTTCACTATCC 70036 >ref|XM_001012908.1| Tetrahymena thermophila cyclic nucleotide-binding domain containing protein, mRNA Length=2484 Score = 36.2 bits (18), Expect = 6.7 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 3 GGAGAATTCTCTTCACTA 20 |||||||||||||||||| Sbjct 2051 GGAGAATTCTCTTCACTA 2034 >emb|BX678775.3| Mouse DNA sequence from clone RP24-82E8 on chromosome 11, complete sequence Length=65735 Score = 36.2 bits (18), Expect = 6.7 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Plus Query 2 TGGAGAATTCTCTTCACT 19 |||||||||||||||||| Sbjct 7102 TGGAGAATTCTCTTCACT 7119 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 520114688834 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Mar 7, 2012 04:42 PM Number of letters in database: 40,323,510,998 Number of sequences in database: 15,734,439 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2